Cis Phased Block

Trial Use

May change in future releases. See Maturity Model.

Computational Definition

An ordered set of co-occurring variants on the same molecule.

GA4GH Digest

Prefix	Inherent
CPB	[‘members’, ‘type’]

Information Model

Some CisPhasedBlock attributes are inherited from Variation.

Field	Flags	Type	Limits	Description
id		string	0..1	The ‘logical’ identifier of the Entity in the system of record, e.g. a UUID. This ‘id’ is unique within a given system, but may or may not be globally unique outside the system. It is used within a system to reference an object from another.
type		string	1..1	MUST be “CisPhasedBlock”
name		string	0..1	A primary name for the entity.
description		string	0..1	A free-text description of the Entity.
aliases	⋮	string	0..m	Alternative name(s) for the Entity.
extensions	⋮	Extension	0..m	A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.
digest		string	0..1	A sha512t24u digest created using the VRS Computed Identifier algorithm.
expressions	⋮	Expression	0..m
members	⋮	Allele | iriReference	2..m	A list of Alleles that are found in-cis on a shared molecule.
sequenceReference		SequenceReference	0..1	An optional Sequence Reference on which all of the in-cis Alleles are found. When defined, this may be used to implicitly define the sequenceReference attribute for each of the CisPhasedBlock member Alleles.

Inherits: MolecularVariation

Used in: Derivative Molecule

Note

This class is imported from VRS. Refer to the upstream specification for its authoritative, full definition.