Relative Sequence Location

Draft

May change significantly in future releases. See Maturity Model.

Computational Definition

A location on a base sequence and its position relative to a boundary offset on a mapped sequence gap. Typically used to describe intronic locations that exist with respect to a mapped RNA transcript sequence.

GA4GH Digest

Prefix	Inherent
RSL	[‘baseSequenceLocation’, ‘mappedSequenceLocation’, ‘type’]

Information Model

Some RelativeSequenceLocation attributes are inherited from Ga4ghIdentifiableObject.

Field	Flags	Type	Limits	Description
id		string	0..1	The ‘logical’ identifier of the Entity in the system of record, e.g. a UUID. This ‘id’ is unique within a given system, but may or may not be globally unique outside the system. It is used within a system to reference an object from another.
type		string	1..1	MUST be “RelativeSequenceLocation”
name		string	0..1	A primary name for the entity.
description		string	0..1	A free-text description of the Entity.
aliases	⋮	string	0..m	Alternative name(s) for the Entity.
extensions	⋮	Extension	0..m	A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.
digest		string	0..1	A sha512t24u digest created using the VRS Computed Identifier algorithm.
baseSequenceLocation		SequenceLocation | iriReference	1..1	An absolute location on a sequence.
mappedSequenceLocation		iriReference | Sequence Offset Location	1..1	A location relative to an offset on a mapped sequence.

Inherits: Location

Used in: Relative Allele

Note

This class is imported from VRS. Refer to the upstream specification for its authoritative, full definition.